Above: The green boxes represent Clue Bottles. The black box represents the Safe.
Just south of the hideout, the first Clue Bottle sits on a well hidden rock.
This one sits on a rock immediately behind the hideout.
Found on a rooftop just south of Clue Bottle #2.
Follow the train tracks south to spot this bottle on a small rock.
Follow the tracks a little more, and climb the series of rocks to reach this bottle.
Southeast from Clue Bottle #5 is the saloon. The next Clue Bottle sits by the entrance.
From the saloon, you can see another Clue Bottle atop a rock. Climb the nearby telephone pole to reach it.
North from Clue Bottle #7 is a large building where you'll find another bottle on the roof.
Look northwest from this roof to spot another bottle atop an outhouse.
Turn east from atop the outhouse to spot a tall building decorated in red, white, and blue banners. A Clue Bottle can be found on top.
South of here is a wire connecting two roofs. A Clue Bottle bobs above it.
This one's a bit out of the way. Drop from to the ground and head south, crossing the train tracks. The Clue Bottle lies just beyond, nestled between two cliffs.
Return to the rooftop near Clue Bottle #11 and cross the wire heading east. Another Clue Bottle rests on the roof here.
Drop to the ground and enter the green barn to the north. Inside, use the pad to launch onto the upper ledge. Hop over the small gap to find a well hidden Clue Bottle.
Head to the roof of this same barn to find another bottle.
Northeast from here is a wire between buildings where you'll find a other Clue Bottle.
To the northwest is a blue building, Toothpick's headquarters. You'll find this Clue Bottle on the roof.
This one is a pain. It rests atop the wooden tower, and the only way to get there is via the springy ledges sticking out from the side. The best way we've found to reach those ledges is to use Sly's paraglider from Clue Bottle #15.